All songs are by The Beatles, except for Commotion by CCR.
Hi, do you mean that all the songs in your list suffer from the loop ending problem, or are you only guessing they probably do so because of the discrepancy between midi and audio lengths? Be aware that there are many songs with such discrepancy but no loop ending problem.
Also, remember that when the custom is not multitrack, you can use method 3 from my list (extracting the audio for phase shifter, then rebuilding in Magma) which doesn't require to modify the midi file, and actually doesn't require any choice on your part. I spent some time trying to unsuccesfully fix the midi of "Would I Lie To You?" which I probably already messed up myself at the first attempt, only to remember later about method 3... which fixed it immediately.